PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G2038
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 232aa    MW: 26517.9 Da    PI: 6.6231
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G2038genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.8e-141561248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g WT+eEd +l  +++++G  +W+  ++  g+ R++k+c++rw +yl
      Gh_A01G2038 15 GTWTAEEDRKLTAYITRYGCWNWRQLPKFAGLARCGKSCRLRWMNYL 61
                     78*****************99************************97 PP

2Myb_DNA-binding58.51.5e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEde ++ +++ lG++ W++Ia++++ gRt++++k++w++ 
      Gh_A01G2038  67 RGNFTKEEDETIITLHESLGNR-WSAIAAMLP-GRTDNEIKNHWHTN 111
                      89********************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.954961IPR017930Myb domain
SuperFamilySSF466891.45E-2912108IPR009057Homeodomain-like
SMARTSM007178.5E-81363IPR001005SANT/Myb domain
PfamPF002491.3E-111561IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-231568IPR009057Homeodomain-like
CDDcd001677.55E-91661No hitNo description
PROSITE profilePS5129426.41662116IPR017930Myb domain
SMARTSM007178.7E-1866114IPR001005SANT/Myb domain
PfamPF002497.0E-1767111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-2769116IPR009057Homeodomain-like
CDDcd001672.17E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVKKPCCDKS GLRQGTWTAE EDRKLTAYIT RYGCWNWRQL PKFAGLARCG KSCRLRWMNY  60
LRPNLKRGNF TKEEDETIIT LHESLGNRWS AIAAMLPGRT DNEIKNHWHT NLKKHVKHKP  120
STTKLHDKYT NNQNLNDDHL QINPIIPPLI LESSPPPPLS TNTQSPFTTT DNSVESTKAD  180
SVSDFWSEPF LLDILSDDLP TMGASAGFEF DLLDGEILSP FGFYDDLEPF SF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451743.11e-171PREDICTED: protein ODORANT1-like
SwissprotQ7XBH41e-57MYB4_ORYSJ; Myb-related protein Myb4
TrEMBLA0A0D2NGT11e-171A0A0D2NGT1_G
STRINGPOPTR_0013s14560.12e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2426334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.18e-59myb domain protein 13